Fishing tackle boxes are *great* for this! I put my cable needles, row counters, point protectors, scissors, yarn needles-even crochet needles- and stitch markers in one. Its wonderful for this purpose.
I also use tackle boxes in my sewing room, for sewing machine presser feet, and other miscellaneous notions.
My love of these tackle boxes started way back in art school, when I used them for my art supplies. They were a cheap alternative to the ones made especially for art supplies-but were essentially the same things
I recently bought some dollar store pencil bags for my circs, but I don't really like them that well for it. They work, but it's hard to label them and I find them a bit of a pain to use for that reason.